Pairwise fitting emdb-1975 on pdb-3j8c by gmfit










Pairwise fitting of target emdb-1975 on reference pdb-3j8c by gmfit(PID:4113107).





RANK[1] Corr.Coeff:0.451

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1975)

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Functional reconstitution of the 13-subunit human translation initiation factor eIF3. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1975)]







REFERENCE(pdb-3j8c)

display:



color:


b'MODEL OF THE HUMAN EIF3 PCI-MPN OCTAMER DOCKED INTO THE 43S EM MAP    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.451
0.394
0.390
0.388
0.388
0.369
0.356
0.351
0.345
0.331







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j8c"(PDB-format) or 
 "3j8c"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1975.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.193812,-0.278842,0.940576 98.821259 center 0,0,0 model #1
move 497.139302,226.389212,112.322893 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j8c)]

[Download the target GMM(emdb 1975)]

[Download gmfit result file(4113107)]