Pairwise fitting emdb-1975 on pdb-3j8c by gmfit



Pairwise fitting of target emdb-1975 on reference pdb-3j8c by gmfit(PID:4116901).

RANK[1] Corr.Coeff:0.451 [JSmol] [Molmil]
TARGET(emdb-1975)
display:
color:
Functional reconstitution of the 13-subunit human translation initiation factor eIF3. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1975)]
REFERENCE(pdb-3j8c)
display:
color:
b'MODEL OF THE HUMAN EIF3 PCI-MPN OCTAMER DOCKED INTO THE 43S EM MAP ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.451 0.394 0.390 0.388 0.388 0.369 0.356 0.351 0.345 0.331

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j8c"(PDB-format) or "3j8c"(mmCIF-format), and read it.
  2. Download the Target map "emd_1975.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.193812,-0.278842,0.940576 98.821259 center 0,0,0 model #1
    move 497.139302,226.389212,112.322893 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j8c)] [Download the target GMM(emdb 1975)] [Download gmfit result file(4116901)]