Pairwise fitting emdb-1975 on pdb-3j0j by gmfit



Pairwise fitting of target emdb-1975 on reference pdb-3j0j by gmfit(PID:4093144).

RANK[1] Corr.Coeff:0.510 [JSmol] [Molmil]
TARGET(emdb-1975)
display:
color:
Functional reconstitution of the 13-subunit human translation initiation factor eIF3. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1975)]
REFERENCE(pdb-3j0j)
display:
color:
b'FITTED ATOMIC MODELS OF THERMUS THERMOPHILUS V-ATPASE SUBUNITS INTO ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.510 0.417 0.409 0.394 0.391 0.383 0.373 0.373 0.361 0.360

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j0j"(PDB-format) or "3j0j"(mmCIF-format), and read it.
  2. Download the Target map "emd_1975.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.203093,-0.697284,-0.687421 124.894281 center 0,0,0 model #1
    move 7.572972,-182.054148,-283.734421 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j0j)] [Download the target GMM(emdb 1975)] [Download gmfit result file(4093144)]