Pairwise fitting emdb-1975 on pdb-2xfc by gmfit



Pairwise fitting of target emdb-1975 on reference pdb-2xfc by gmfit(PID:4135772).

RANK[1] Corr.Coeff:0.455 [JSmol] [Molmil]
TARGET(emdb-1975)
display:
color:
Functional reconstitution of the 13-subunit human translation initiation factor eIF3. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1975)]
REFERENCE(pdb-2xfc)
display:
color:
b'CHIKUNGUNYA E1 E2 ENVELOPE GLYCOPROTEINS FITTED IN SEMLIKI FOREST ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.455 0.434 0.414 0.414 0.414 0.388 0.381 0.366 0.352 0.341

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2xfc"(PDB-format) or "2xfc"(mmCIF-format), and read it.
  2. Download the Target map "emd_1975.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.616483,-0.000509,-0.787368 122.047220 center 0,0,0 model #1
    move -236.218246,165.455335,152.426869 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2xfc)] [Download the target GMM(emdb 1975)] [Download gmfit result file(4135772)]