Pairwise fitting emdb-1936 on pdb-3iym by gmfit










Pairwise fitting of target emdb-1936 on reference pdb-3iym by gmfit(PID:4058229).





RANK[1] Corr.Coeff:0.058

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1936)

display:



color:



N42 Rabbit Hemorrhagic Disease Virus (RHDV) T3 capsid [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1936)]







REFERENCE(pdb-3iym)

display:



color:


b'BACKBONE TRACE OF THE CAPSID PROTEIN DIMER OF A FUNGAL PARTITIVIRUS   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.058
0.011
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iym"(PDB-format) or 
 "3iym"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1936.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.617415,-0.106760,0.779359 143.884650 center 0,0,0 model #1
move -31.703797,123.970468,173.570345 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3iym)]

[Download the target GMM(emdb 1936)]

[Download gmfit result file(4058229)]