Pairwise fitting emdb-1908 on pdb-5g2y by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-5g2y by gmfit(PID:369599).





RANK[1] Corr.Coeff:0.578

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

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Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-5g2y)

display:



color:


b'STRUCTURE A OF GROUP II INTRON COMPLEXED WITH ITS REVERSE             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.578
0.518
0.476
0.472
0.419
0.388
0.386
0.379
0.376
0.374







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5g2y"(PDB-format) or 
 "5g2y"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.647475,0.462907,0.605387 153.648782 center 0,0,0 model #1
move 4.443160,51.644231,5.921558 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5g2y)]

[Download the target GMM(emdb 1908)]

[Download gmfit result file(369599)]