Pairwise fitting emdb-1908 on pdb-3j0e by gmfit



Pairwise fitting of target emdb-1908 on reference pdb-3j0e by gmfit(PID:4131497).

RANK[1] Corr.Coeff:0.616 [JSmol] [Molmil]
TARGET(emdb-1908)
display:
color:
Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1908)]
REFERENCE(pdb-3j0e)
display:
color:
b'MODELS FOR THE T. THERMOPHILUS RIBOSOME RECYCLING FACTOR AND THE E. ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.616 0.542 0.512 0.464 0.462 0.461 0.424 0.403 0.392 0.364

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j0e"(PDB-format) or "3j0e"(mmCIF-format), and read it.
  2. Download the Target map "emd_1908.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.945322,0.082004,0.315660 133.538790 center 0,0,0 model #1
    move 155.345444,188.373200,336.514773 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j0e)] [Download the target GMM(emdb 1908)] [Download gmfit result file(4131497)]