Pairwise fitting emdb-1908 on pdb-2wwa by gmfit



Pairwise fitting of target emdb-1908 on reference pdb-2wwa by gmfit(PID:4102353).

RANK[1] Corr.Coeff:0.559 [JSmol] [Molmil]
TARGET(emdb-1908)
display:
color:
Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1908)]
REFERENCE(pdb-2wwa)
display:
color:
b'CRYO-EM STRUCTURE OF IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.559 0.529 0.521 0.499 0.457 0.457 0.436 0.426 0.420 0.414

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2wwa"(PDB-format) or "2wwa"(mmCIF-format), and read it.
  2. Download the Target map "emd_1908.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.822880,-0.506848,-0.256853 110.437658 center 0,0,0 model #1
    move 151.790917,142.649897,-85.200178 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2wwa)] [Download the target GMM(emdb 1908)] [Download gmfit result file(4102353)]