Pairwise fitting emdb-1908 on pdb-2vrh by gmfit



Pairwise fitting of target emdb-1908 on reference pdb-2vrh by gmfit(PID:4114283).

RANK[1] Corr.Coeff:0.443 [JSmol] [Molmil]
TARGET(emdb-1908)
display:
color:
Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1908)]
REFERENCE(pdb-2vrh)
display:
color:
b'STRUCTURE OF THE E. COLI TRIGGER FACTOR BOUND TO A TRANSLATING ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.443 0.379 0.364 0.344 0.338 0.333 0.326 0.309 0.303 0.260

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2vrh"(PDB-format) or "2vrh"(mmCIF-format), and read it.
  2. Download the Target map "emd_1908.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.124248,-0.341019,-0.931809 140.095253 center 0,0,0 model #1
    move 603.869667,470.481427,242.185850 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2vrh)] [Download the target GMM(emdb 1908)] [Download gmfit result file(4114283)]