Pairwise fitting emdb-1908 on pdb-2vrh by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-2vrh by gmfit(PID:4114283).





RANK[1] Corr.Coeff:0.443

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

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Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-2vrh)

display:



color:


b'STRUCTURE OF THE E. COLI TRIGGER FACTOR BOUND TO A TRANSLATING        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.443
0.379
0.364
0.344
0.338
0.333
0.326
0.309
0.303
0.260







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2vrh"(PDB-format) or 
 "2vrh"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.124248,-0.341019,-0.931809 140.095253 center 0,0,0 model #1
move 603.869667,470.481427,242.185850 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2vrh)]

[Download the target GMM(emdb 1908)]

[Download gmfit result file(4114283)]