Pairwise fitting emdb-1908 on pdb-2bg9 by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-2bg9 by gmfit(PID:18400).





RANK[1] Corr.Coeff:0.669

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

display:



color:



Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-2bg9)

display:



color:


b'REFINED STRUCTURE OF THE NICOTINIC ACETYLCHOLINE RECEPTOR AT 4A       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.669
0.645
0.581
0.573
0.527
0.514
0.460
0.459
0.440
0.421







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2bg9"(PDB-format) or 
 "2bg9"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.968816,0.072222,0.237020 176.255766 center 0,0,0 model #1
move 35.820894,176.026243,267.371355 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2bg9)]

[Download the target GMM(emdb 1908)]

[Download gmfit result file(18400)]