Pairwise fitting emdb-1836 on pdb-5ipk by gmfit



Pairwise fitting of target emdb-1836 on reference pdb-5ipk by gmfit(PID:4109031).

RANK[1] Corr.Coeff:0.967 [JSmol] [Molmil]
TARGET(emdb-1836)
display:
color:
Conformational changes of Adeno-associated Virus type 1 induced by genome packaging [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1836)]
REFERENCE(pdb-5ipk)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.967 0.924 0.915 0.914 0.906 0.905 0.905 0.903 0.903 0.901

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5ipk"(PDB-format) or "5ipk"(mmCIF-format), and read it.
  2. Download the Target map "emd_1836.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.577238,-0.578362,0.576449 119.029901 center 0,0,0 model #1
    move 350.873127,6.019725,347.793782 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5ipk)] [Download the target GMM(emdb 1836)] [Download gmfit result file(4109031)]