Pairwise fitting emdb-1836 on pdb-5a32 by gmfit










Pairwise fitting of target emdb-1836 on reference pdb-5a32 by gmfit(PID:4168350).





RANK[1] Corr.Coeff:0.122

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1836)

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Conformational changes of Adeno-associated Virus type 1 induced by genome packaging [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1836)]







REFERENCE(pdb-5a32)

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color:


b'ELECTRON CRYO-MICROSCOPY OF COWPEA MOSAIC VIRUS CONTAINING RNA-1      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.122
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5a32"(PDB-format) or 
 "5a32"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1836.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.577947,0.643588,-0.501768 169.318904 center 0,0,0 model #1
move 365.694295,231.725939,553.542016 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5a32)]

[Download the target GMM(emdb 1836)]

[Download gmfit result file(4168350)]