Pairwise fitting emdb-1836 on emdb-3129 by gmfit










Pairwise fitting of target emdb-1836 on reference emdb-3129 by gmfit(PID:4131155).





RANK[1] Corr.Coeff:0.519

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1836)

display:



color:



Conformational changes of Adeno-associated Virus type 1 induced by genome packaging [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1836)]







REFERENCE(emdb-3129)

display:



color:


Structure-based energetics of protein interfaces guide FMDV vaccine design [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.519
0.477
0.476
0.475
0.474
0.474
0.474
0.473
0.471
0.470







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3129.map.gz", and read it.

  2.  Download the Target map "emd_1836.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.380480,-0.923996,0.038288 174.195348 center 0,0,0 model #1
move 42.596134,-234.908305,185.238239 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 3129)]

[Download the target GMM(emdb 1836)]

[Download gmfit result file(4131155)]