Pairwise fitting emdb-1836 on emdb-2180 by gmfit










Pairwise fitting of target emdb-1836 on reference emdb-2180 by gmfit(PID:4098717).





RANK[1] Corr.Coeff:0.574

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1836)

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Conformational changes of Adeno-associated Virus type 1 induced by genome packaging [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1836)]







REFERENCE(emdb-2180)

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3D reconstruction of LDL at 37C (human body temperature) using cryo-EM techniques [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.574
0.541
0.504
0.461
0.428
0.427
0.426
0.415
0.415
0.414







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2180.map.gz", and read it.

  2.  Download the Target map "emd_1836.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.616606,-0.023091,0.786933 94.449161 center 0,0,0 model #1
move -18.102554,-15.437289,-316.152753 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2180)]

[Download the target GMM(emdb 1836)]

[Download gmfit result file(4098717)]