Pairwise fitting emdb-1836 on emdb-2107 by gmfit



Pairwise fitting of target emdb-1836 on reference emdb-2107 by gmfit(PID:4098030).

RANK[1] Corr.Coeff:0.511 [JSmol] [Molmil]
TARGET(emdb-1836)
display:
color:
Conformational changes of Adeno-associated Virus type 1 induced by genome packaging [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1836)]
REFERENCE(emdb-2107)
display:
color:
HRV2 full native capsid [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.511 0.484 0.482 0.481 0.480 0.478 0.477 0.476 0.475 0.474

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2107.map.gz", and read it.
  2. Download the Target map "emd_1836.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.821815,0.235396,-0.518854 111.942814 center 0,0,0 model #1
    move 58.191777,473.126784,248.701028 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2107)] [Download the target GMM(emdb 1836)] [Download gmfit result file(4098030)]