Pairwise fitting emdb-1836 on emdb-2107 by gmfit










Pairwise fitting of target emdb-1836 on reference emdb-2107 by gmfit(PID:8732).





RANK[1] Corr.Coeff:0.511

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1836)

display:



color:



Conformational changes of Adeno-associated Virus type 1 induced by genome packaging [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1836)]







REFERENCE(emdb-2107)

display:



color:


HRV2 full native capsid [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.511
0.484
0.482
0.481
0.480
0.478
0.477
0.476
0.475
0.474







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2107.map.gz", and read it.

  2.  Download the Target map "emd_1836.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.821815,0.235396,-0.518854 111.942814 center 0,0,0 model #1
move 58.191777,473.126784,248.701028 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2107)]

[Download the target GMM(emdb 1836)]

[Download gmfit result file(8732)]