Pairwise fitting emdb-1774 on pdb-5a2q by gmfit



Pairwise fitting of target emdb-1774 on reference pdb-5a2q by gmfit(PID:304318).

RANK[1] Corr.Coeff:0.722 [JSmol] [Molmil]
TARGET(emdb-1774)
display:
color:
Understanding Ribosome Assembly: The Structure of in vivo Assembled Immature 30S Subunits Revealed by Cryo-Electron Microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1774)]
REFERENCE(pdb-5a2q)
display:
color:
b'STRUCTURE OF THE HCV IRES BOUND TO THE HUMAN RIBOSOME ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.722 0.609 0.541 0.524 0.510 0.496 0.480 0.444 0.420 0.340

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5a2q"(PDB-format) or "5a2q"(mmCIF-format), and read it.
  2. Download the Target map "emd_1774.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.646727,-0.428843,-0.630744 167.408076 center 0,0,0 model #1
    move 377.467107,286.003359,187.665294 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!