Pairwise fitting emdb-1774 on pdb-3j9u by gmfit



Pairwise fitting of target emdb-1774 on reference pdb-3j9u by gmfit(PID:4073567).

RANK[1] Corr.Coeff:0.582 [JSmol] [Molmil]
TARGET(emdb-1774)
display:
color:
Understanding Ribosome Assembly: The Structure of in vivo Assembled Immature 30S Subunits Revealed by Cryo-Electron Microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1774)]
REFERENCE(pdb-3j9u)
display:
color:
b'YEAST V-ATPASE STATE 2 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.582 0.526 0.505 0.497 0.400 0.392 0.385 0.384 0.343 0.314

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j9u"(PDB-format) or "3j9u"(mmCIF-format), and read it.
  2. Download the Target map "emd_1774.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.262112,-0.511193,-0.818523 165.316321 center 0,0,0 model #1
    move 196.910075,100.602791,-100.218035 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j9u)] [Download the target GMM(emdb 1774)] [Download gmfit result file(4073567)]