Pairwise fitting emdb-1774 on pdb-3j80 by gmfit










Pairwise fitting of target emdb-1774 on reference pdb-3j80 by gmfit(PID:516661).





RANK[1] Corr.Coeff:0.740

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1774)

display:



color:



Understanding Ribosome Assembly: The Structure of in vivo Assembled Immature 30S Subunits Revealed by Cryo-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1774)]







REFERENCE(pdb-3j80)

display:



color:


b'CRYOEM STRUCTURE OF 40S-EIF1-EIF1A PREINITIATION COMPLEX              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.740
0.606
0.533
0.503
0.502
0.487
0.460
0.389
0.372
0.369







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j80"(PDB-format) or 
 "3j80"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1774.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.393432,0.442099,-0.806076 158.151710 center 0,0,0 model #1
move 179.774197,478.999131,209.620751 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!