Pairwise fitting emdb-1774 on pdb-3j2b by gmfit



Pairwise fitting of target emdb-1774 on reference pdb-3j2b by gmfit(PID:4089092).

RANK[1] Corr.Coeff:0.642 [JSmol] [Molmil]
TARGET(emdb-1774)
display:
color:
Understanding Ribosome Assembly: The Structure of in vivo Assembled Immature 30S Subunits Revealed by Cryo-Electron Microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1774)]
REFERENCE(pdb-3j2b)
display:
color:
b'DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.642 0.549 0.467 0.421 0.412 0.406 0.400 0.309 0.262 0.257

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j2b"(PDB-format) or "3j2b"(mmCIF-format), and read it.
  2. Download the Target map "emd_1774.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.883243,-0.452251,0.123899 51.220679 center 0,0,0 model #1
    move -98.239211,-266.818434,-38.926334 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j2b)] [Download the target GMM(emdb 1774)] [Download gmfit result file(4089092)]