Pairwise fitting emdb-1774 on pdb-3j2b by gmfit










Pairwise fitting of target emdb-1774 on reference pdb-3j2b by gmfit(PID:4149511).





RANK[1] Corr.Coeff:0.642

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1774)

display:



color:



Understanding Ribosome Assembly: The Structure of in vivo Assembled Immature 30S Subunits Revealed by Cryo-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1774)]







REFERENCE(pdb-3j2b)

display:



color:


b'DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.642
0.549
0.467
0.421
0.412
0.406
0.400
0.309
0.262
0.257







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2b"(PDB-format) or 
 "3j2b"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1774.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.883243,-0.452251,0.123899 51.220679 center 0,0,0 model #1
move -98.239211,-266.818434,-38.926334 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j2b)]

[Download the target GMM(emdb 1774)]

[Download gmfit result file(4149511)]