Pairwise fitting emdb-1770 on pdb-3j81 by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-3j81 by gmfit(PID:4127215).





RANK[1] Corr.Coeff:0.825

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

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color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-3j81)

display:



color:


b'CRYOEM STRUCTURE OF A PARTIAL YEAST 48S PREINITIATION COMPLEX         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.825
0.732
0.674
0.672
0.671
0.663
0.653
0.596
0.587
0.529







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j81"(PDB-format) or 
 "3j81"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.467623,0.859705,0.205513 168.422175 center 0,0,0 model #1
move 201.970881,197.233401,200.728124 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j81)]

[Download the target GMM(emdb 1770)]

[Download gmfit result file(4127215)]