Pairwise fitting emdb-1770 on pdb-3j81 by gmfit



Pairwise fitting of target emdb-1770 on reference pdb-3j81 by gmfit(PID:4127215).

RANK[1] Corr.Coeff:0.825 [JSmol] [Molmil]
TARGET(emdb-1770)
display:
color:
30S-002mRNA (after classification) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1770)]
REFERENCE(pdb-3j81)
display:
color:
b'CRYOEM STRUCTURE OF A PARTIAL YEAST 48S PREINITIATION COMPLEX ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.825 0.732 0.674 0.672 0.671 0.663 0.653 0.596 0.587 0.529

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j81"(PDB-format) or "3j81"(mmCIF-format), and read it.
  2. Download the Target map "emd_1770.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.467623,0.859705,0.205513 168.422175 center 0,0,0 model #1
    move 201.970881,197.233401,200.728124 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j81)] [Download the target GMM(emdb 1770)] [Download gmfit result file(4127215)]