Pairwise fitting emdb-1770 on pdb-3j2f by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-3j2f by gmfit(PID:343677).





RANK[1] Corr.Coeff:0.727

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-3j2f)

display:



color:


b'DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.727
0.627
0.558
0.550
0.536
0.529
0.527
0.475
0.390
0.371







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2f"(PDB-format) or 
 "3j2f"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.739161,-0.621062,-0.260620 158.611495 center 0,0,0 model #1
move -6.908704,-0.002863,-0.959175 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!