Pairwise fitting emdb-1770 on pdb-3j2a by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-3j2a by gmfit(PID:618109).





RANK[1] Corr.Coeff:0.739

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-3j2a)

display:



color:


b'DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.739
0.633
0.557
0.532
0.532
0.529
0.522
0.520
0.400
0.391







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2a"(PDB-format) or 
 "3j2a"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.727000,-0.624231,-0.286019 161.347007 center 0,0,0 model #1
move -8.070271,0.148831,2.917644 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!