Pairwise fitting emdb-1770 on pdb-3iy8 by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-3iy8 by gmfit(PID:391543).





RANK[1] Corr.Coeff:0.573

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-3iy8)

display:



color:


b'LEISHMANIA TARENTOLAE MITONCHONDRIAL RIBOSOME SMALL SUBUNIT           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.573
0.465
0.462
0.458
0.452
0.449
0.431
0.408
0.383
0.375







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iy8"(PDB-format) or 
 "3iy8"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.709768,-0.704427,-0.003405 178.653823 center 0,0,0 model #1
move -38.054036,39.565749,18.698268 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!