Pairwise fitting emdb-1737 on pdb-5j0n by gmfit



Pairwise fitting of target emdb-1737 on reference pdb-5j0n by gmfit(PID:4089581).

RANK[1] Corr.Coeff:0.428 [JSmol] [Molmil]
TARGET(emdb-1737)
display:
color:
Pyruvate carboxylase from S. aureus after addition of acetyl-CoA, AMP-PNP, KHCO3 and pyruvate [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1737)]
REFERENCE(pdb-5j0n)
display:
color:
b'LAMBDA EXCISION HJ INTERMEDIATE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.428 0.423 0.412 0.399 0.399 0.361 0.344 0.334 0.328 0.319

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5j0n"(PDB-format) or "5j0n"(mmCIF-format), and read it.
  2. Download the Target map "emd_1737.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.802850,0.012866,0.596043 166.696670 center 0,0,0 model #1
    move 324.180104,282.928778,388.147747 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5j0n)] [Download the target GMM(emdb 1737)] [Download gmfit result file(4089581)]