Pairwise fitting emdb-1737 on pdb-4aas by gmfit










Pairwise fitting of target emdb-1737 on reference pdb-4aas by gmfit(PID:4168816).





RANK[1] Corr.Coeff:0.540

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1737)

display:



color:



Pyruvate carboxylase from S. aureus after addition of acetyl-CoA, AMP-PNP, KHCO3 and pyruvate [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1737)]







REFERENCE(pdb-4aas)

display:



color:


b'ATP-TRIGGERED MOLECULAR MECHANICS OF THE CHAPERONIN GROEL             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.540
0.518
0.516
0.511
0.504
0.500
0.499
0.493
0.426
0.426







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4aas"(PDB-format) or 
 "4aas"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1737.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.898737,-0.312528,-0.307567 170.929643 center 0,0,0 model #1
move 81.110249,223.336417,163.718990 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4aas)]

[Download the target GMM(emdb 1737)]

[Download gmfit result file(4168816)]