Pairwise fitting emdb-1737 on pdb-4a13 by gmfit



Pairwise fitting of target emdb-1737 on reference pdb-4a13 by gmfit(PID:4111728).

RANK[1] Corr.Coeff:0.641 [JSmol] [Molmil]
TARGET(emdb-1737)
display:
color:
Pyruvate carboxylase from S. aureus after addition of acetyl-CoA, AMP-PNP, KHCO3 and pyruvate [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1737)]
REFERENCE(pdb-4a13)
display:
color:
b'MODEL REFINED AGAINST SYMMETRY-FREE CRYO-EM MAP OF TRIC-ADP ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.641 0.562 0.552 0.552 0.552 0.549 0.538 0.534 0.530 0.522

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4a13"(PDB-format) or "4a13"(mmCIF-format), and read it.
  2. Download the Target map "emd_1737.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.790619,0.612250,-0.008484 179.559902 center 0,0,0 model #1
    move 116.033459,205.306313,169.389365 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4a13)] [Download the target GMM(emdb 1737)] [Download gmfit result file(4111728)]