Pairwise fitting emdb-1718 on emdb-1173 by gmfit










Pairwise fitting of target emdb-1718 on reference emdb-1173 by gmfit(PID:4131487).





RANK[1] Corr.Coeff:0.459

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1718)

display:



color:



Ribosome dynamics and tRNA movement as visualized by time-resolved electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1718)]







REFERENCE(emdb-1173)

display:



color:


Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome. [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.459
0.421
0.408
0.408
0.405
0.401
0.397
0.392
0.391
0.391







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1173.map.gz", and read it.

  2.  Download the Target map "emd_1718.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.995158,0.067245,-0.071683 142.167292 center 0,0,0 model #1
move -195.074393,63.276798,250.224260 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1173)]

[Download the target GMM(emdb 1718)]

[Download gmfit result file(4131487)]