Pairwise fitting emdb-1711 on pdb-5tj5 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-5tj5 by gmfit(PID:4125785).





RANK[1] Corr.Coeff:0.640

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-5tj5)

display:



color:


b'ATOMIC MODEL FOR THE MEMBRANE-EMBEDDED MOTOR OF A EUKARYOTIC V-ATPASE ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.640
0.586
0.583
0.581
0.580
0.580
0.577
0.570
0.566
0.564







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5tj5"(PDB-format) or 
 "5tj5"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.445116,0.533454,0.719235 115.040861 center 0,0,0 model #1
move 156.049222,161.631459,159.683214 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5tj5)]

[Download the target GMM(emdb 1711)]

[Download gmfit result file(4125785)]