Pairwise fitting emdb-1711 on pdb-5tj5 by gmfit



Pairwise fitting of target emdb-1711 on reference pdb-5tj5 by gmfit(PID:4125785).

RANK[1] Corr.Coeff:0.640 [JSmol] [Molmil]
TARGET(emdb-1711)
display:
color:
Pyrococcus furiosus RNA Polymerase [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1711)]
REFERENCE(pdb-5tj5)
display:
color:
b'ATOMIC MODEL FOR THE MEMBRANE-EMBEDDED MOTOR OF A EUKARYOTIC V-ATPASE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.640 0.586 0.583 0.581 0.580 0.580 0.577 0.570 0.566 0.564

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5tj5"(PDB-format) or "5tj5"(mmCIF-format), and read it.
  2. Download the Target map "emd_1711.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.445116,0.533454,0.719235 115.040861 center 0,0,0 model #1
    move 156.049222,161.631459,159.683214 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5tj5)] [Download the target GMM(emdb 1711)] [Download gmfit result file(4125785)]