Pairwise fitting emdb-1711 on pdb-5fkv by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-5fkv by gmfit(PID:912452).





RANK[1] Corr.Coeff:0.604

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-5fkv)

display:



color:


b'CRYO-EM STRUCTURE OF THE E. COLI REPLICATIVE DNA POLYMERASE COMPLEX   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.604
0.586
0.557
0.553
0.549
0.548
0.547
0.543
0.534
0.516







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5fkv"(PDB-format) or 
 "5fkv"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.138693,0.367875,-0.919474 68.117029 center 0,0,0 model #1
move 112.395957,97.431066,122.672590 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5fkv)]

[Download the target GMM(emdb 1711)]

[Download gmfit result file(912452)]