Pairwise fitting emdb-1711 on pdb-5fkv by gmfit



Pairwise fitting of target emdb-1711 on reference pdb-5fkv by gmfit(PID:4109821).

RANK[1] Corr.Coeff:0.604 [JSmol] [Molmil]
TARGET(emdb-1711)
display:
color:
Pyrococcus furiosus RNA Polymerase [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1711)]
REFERENCE(pdb-5fkv)
display:
color:
b'CRYO-EM STRUCTURE OF THE E. COLI REPLICATIVE DNA POLYMERASE COMPLEX ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.604 0.586 0.557 0.553 0.549 0.548 0.547 0.543 0.534 0.516

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5fkv"(PDB-format) or "5fkv"(mmCIF-format), and read it.
  2. Download the Target map "emd_1711.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.138693,0.367875,-0.919474 68.117029 center 0,0,0 model #1
    move 112.395957,97.431066,122.672590 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5fkv)] [Download the target GMM(emdb 1711)] [Download gmfit result file(4109821)]