Pairwise fitting emdb-1711 on pdb-3jd2 by gmfit










Pairwise fitting of target emdb-1711 on reference pdb-3jd2 by gmfit(PID:137342).





RANK[1] Corr.Coeff:0.688

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(pdb-3jd2)

display:



color:


b'GLUTAMATE DEHYDROGENASE IN COMPLEX WITH NADH, OPEN CONFORMATION       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.688
0.679
0.672
0.671
0.670
0.667
0.649
0.644
0.617
0.615







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jd2"(PDB-format) or 
 "3jd2"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.768786,0.638076,-0.042735 110.549073 center 0,0,0 model #1
move 88.739275,80.174948,87.461028 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!