Pairwise fitting emdb-1711 on pdb-3j09 by gmfit



Pairwise fitting of target emdb-1711 on reference pdb-3j09 by gmfit(PID:211001).

RANK[1] Corr.Coeff:0.559 [JSmol] [Molmil]
TARGET(emdb-1711)
display:
color:
Pyrococcus furiosus RNA Polymerase [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1711)]
REFERENCE(pdb-3j09)
display:
color:
b'HIGH RESOLUTION HELICAL RECONSTRUCTION OF THE BACTERIAL P-TYPE ATPASE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.559 0.545 0.529 0.524 0.522 0.519 0.502 0.499 0.496 0.495

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j09"(PDB-format) or "3j09"(mmCIF-format), and read it.
  2. Download the Target map "emd_1711.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.479159,0.258894,-0.838678 135.540932 center 0,0,0 model #1
    move 101.406264,95.776248,79.904605 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!