Pairwise fitting emdb-1711 on emdb-6062 by gmfit










Pairwise fitting of target emdb-1711 on reference emdb-6062 by gmfit(PID:1236352).





RANK[1] Corr.Coeff:0.522

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1711)

display:



color:



Pyrococcus furiosus RNA Polymerase [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1711)]







REFERENCE(emdb-6062)

display:



color:


Negative stain EM structure of the yeast dynein motor domain in the presence of AMPPNP [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.522
0.502
0.455
0.451
0.425
0.424
0.415
0.407
0.402
0.398







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6062.map.gz", and read it.

  2.  Download the Target map "emd_1711.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.931665,-0.317271,0.177032 86.737879 center 0,0,0 model #1
move 133.224851,139.097402,128.682972 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!