Pairwise fitting emdb-1618 on pdb-4ux1 by gmfit



Pairwise fitting of target emdb-1618 on reference pdb-4ux1 by gmfit(PID:4113324).

RANK[1] Corr.Coeff:0.414 [JSmol] [Molmil]
TARGET(emdb-1618)
display:
color:
3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1618)]
REFERENCE(pdb-4ux1)
display:
color:
b'CRYO-EM STRUCTURE OF ANTAGONIST-BOUND E2P GASTRIC H,K-ATPASE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.414 0.409 0.386 0.364 0.349 0.338 0.329 0.308 0.229 0.203

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4ux1"(PDB-format) or "4ux1"(mmCIF-format), and read it.
  2. Download the Target map "emd_1618.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.899951,0.425590,-0.094668 175.980294 center 0,0,0 model #1
    move 19.769782,199.030034,75.439658 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4ux1)] [Download the target GMM(emdb 1618)] [Download gmfit result file(4113324)]