Pairwise fitting emdb-1618 on pdb-4ux1 by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-4ux1 by gmfit(PID:4113324).





RANK[1] Corr.Coeff:0.414

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-4ux1)

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b'CRYO-EM STRUCTURE OF ANTAGONIST-BOUND E2P GASTRIC H,K-ATPASE          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.414
0.409
0.386
0.364
0.349
0.338
0.329
0.308
0.229
0.203







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4ux1"(PDB-format) or 
 "4ux1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.899951,0.425590,-0.094668 175.980294 center 0,0,0 model #1
move 19.769782,199.030034,75.439658 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4ux1)]

[Download the target GMM(emdb 1618)]

[Download gmfit result file(4113324)]