Pairwise fitting emdb-1618 on pdb-4c2i by gmfit



Pairwise fitting of target emdb-1618 on reference pdb-4c2i by gmfit(PID:4129083).

RANK[1] Corr.Coeff:0.495 [JSmol] [Molmil]
TARGET(emdb-1618)
display:
color:
3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1618)]
REFERENCE(pdb-4c2i)
display:
color:
b'CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH FAB ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.495 0.461 0.454 0.430 0.399 0.395 0.364 0.343 0.267 0.232

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4c2i"(PDB-format) or "4c2i"(mmCIF-format), and read it.
  2. Download the Target map "emd_1618.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.846417,0.257648,0.466043 176.481468 center 0,0,0 model #1
    move -103.298944,47.563128,136.321460 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4c2i)] [Download the target GMM(emdb 1618)] [Download gmfit result file(4129083)]