Pairwise fitting emdb-1618 on pdb-4c2i by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-4c2i by gmfit(PID:4111019).





RANK[1] Corr.Coeff:0.495

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-4c2i)

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b'CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH FAB       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.495
0.461
0.454
0.430
0.399
0.395
0.364
0.343
0.267
0.232







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4c2i"(PDB-format) or 
 "4c2i"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.846417,0.257648,0.466043 176.481468 center 0,0,0 model #1
move -103.298944,47.563128,136.321460 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4c2i)]

[Download the target GMM(emdb 1618)]

[Download gmfit result file(4111019)]