Pairwise fitting emdb-1618 on pdb-3j7t by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-3j7t by gmfit(PID:233399).





RANK[1] Corr.Coeff:0.445

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

display:



color:



3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-3j7t)

display:



color:


b'CALCIUM ATPASE STRUCTURE WITH TWO BOUND CALCIUM IONS DETERMINED BY    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.445
0.362
0.345
0.314
0.314
0.275
0.273
0.267
0.257
0.247







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j7t"(PDB-format) or 
 "3j7t"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.061025,0.987313,-0.146589 147.525714 center 0,0,0 model #1
move 11.513352,-63.759227,220.783844 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!