Pairwise fitting emdb-1618 on pdb-3j2u by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-3j2u by gmfit(PID:4087700).





RANK[1] Corr.Coeff:0.590

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-3j2u)

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b'KINESIN-13 KLP10A HD IN COMPLEX WITH CS-TUBULIN AND A MICROTUBULE     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.590
0.536
0.484
0.444
0.437
0.437
0.433
0.405
0.376
0.329







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2u"(PDB-format) or 
 "3j2u"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.967086,-0.003571,-0.254424 118.628694 center 0,0,0 model #1
move 26.402907,122.769455,187.034438 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j2u)]

[Download the target GMM(emdb 1618)]

[Download gmfit result file(4087700)]