Pairwise fitting emdb-1618 on pdb-2xzb by gmfit










Pairwise fitting of target emdb-1618 on reference pdb-2xzb by gmfit(PID:612259).





RANK[1] Corr.Coeff:0.406

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1618)

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3D reconstruction of heterodimeric yeast Pol alpha using electron microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1618)]







REFERENCE(pdb-2xzb)

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b'PIG GASTRIC H,K-ATPASE WITH BOUND BEF AND SCH28080                    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.406
0.403
0.398
0.382
0.362
0.343
0.341
0.305
0.219
0.210







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xzb"(PDB-format) or 
 "2xzb"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1618.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.026766,-0.189894,0.981440 96.181105 center 0,0,0 model #1
move 173.610052,-43.329500,-164.890997 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!