Pairwise fitting emdb-1565 on pdb-5afi by gmfit










Pairwise fitting of target emdb-1565 on reference pdb-5afi by gmfit(PID:4158196).





RANK[1] Corr.Coeff:0.921

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1565)

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Recognition of Phe-tRNAPhe, Trp-tRNATrp and  : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1565)]







REFERENCE(pdb-5afi)

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color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.921
0.788
0.774
0.765
0.760
0.748
0.744
0.742
0.742
0.738







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5afi"(PDB-format) or 
 "5afi"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1565.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.802414,-0.175928,0.570246 132.976787 center 0,0,0 model #1
move 159.959522,155.424336,159.150630 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5afi)]

[Download the target GMM(emdb 1565)]

[Download gmfit result file(4158196)]