Pairwise fitting emdb-1565 on pdb-3dg5 by gmfit










Pairwise fitting of target emdb-1565 on reference pdb-3dg5 by gmfit(PID:4062118).





RANK[1] Corr.Coeff:0.883

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1565)

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Recognition of Phe-tRNAPhe, Trp-tRNATrp and  : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1565)]







REFERENCE(pdb-3dg5)

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color:


b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.883
0.802
0.764
0.732
0.726
0.714
0.684
0.679
0.678
0.661







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3dg5"(PDB-format) or 
 "3dg5"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1565.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.913832,0.257064,0.314370 4.912257 center 0,0,0 model #1
move 3.451295,1.175719,3.198892 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3dg5)]

[Download the target GMM(emdb 1565)]

[Download gmfit result file(4062118)]