Pairwise fitting emdb-1559 on pdb-5kgf by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-5kgf by gmfit(PID:4088673).

RANK[1] Corr.Coeff:0.651 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-5kgf)
display:
color:
b'STRUCTURAL MODEL OF 53BP1 BOUND TO A UBIQUITYLATED AND METHYLATED ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.651 0.633 0.629 0.623 0.610 0.609 0.597 0.575 0.575 0.572

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5kgf"(PDB-format) or "5kgf"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.190210,-0.663719,0.723393 137.691437 center 0,0,0 model #1
    move 922.506838,443.676120,19.142785 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5kgf)] [Download the target GMM(emdb 1559)] [Download gmfit result file(4088673)]