Pairwise fitting emdb-1559 on pdb-5kgf by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-5kgf by gmfit(PID:4130937).





RANK[1] Corr.Coeff:0.651

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

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color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-5kgf)

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color:


b'STRUCTURAL MODEL OF 53BP1 BOUND TO A UBIQUITYLATED AND METHYLATED     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.651
0.633
0.629
0.623
0.610
0.609
0.597
0.575
0.575
0.572







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5kgf"(PDB-format) or 
 "5kgf"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.190210,-0.663719,0.723393 137.691437 center 0,0,0 model #1
move 922.506838,443.676120,19.142785 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5kgf)]

[Download the target GMM(emdb 1559)]

[Download gmfit result file(4130937)]