Pairwise fitting emdb-1559 on pdb-4v4u by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-4v4u by gmfit(PID:4096823).

RANK[1] Corr.Coeff:0.307 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-4v4u)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.307 0.303 0.278 0.276 0.273 0.268 0.265 0.265 0.262 0.262

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v4u"(PDB-format) or "4v4u"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.899919,0.383735,0.207108 174.385692 center 0,0,0 model #1
    move -1015.163267,-143.412706,525.190695 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v4u)] [Download the target GMM(emdb 1559)] [Download gmfit result file(4096823)]