Pairwise fitting emdb-1559 on pdb-4ck7 by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-4ck7 by gmfit(PID:642721).

RANK[1] Corr.Coeff:0.510 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-4ck7)
display:
color:
b'PSEUDO-ATOMIC MODEL OF MICROTUBULE-BOUND HUMAN KINESIN-5 MOTOR DOMAIN ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.510 0.485 0.469 0.468 0.462 0.460 0.451 0.451 0.451 0.439

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4ck7"(PDB-format) or "4ck7"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.028458,-0.663274,-0.747835 178.129229 center 0,0,0 model #1
    move 741.871546,-162.396677,-154.747717 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!