Pairwise fitting emdb-1559 on pdb-4aqv by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-4aqv by gmfit(PID:586012).





RANK[1] Corr.Coeff:0.492

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-4aqv)

display:



color:


b'MODEL OF HUMAN KINESIN-5 MOTOR DOMAIN (3HQD) AND MAMMALIAN TUBULIN    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.492
0.474
0.457
0.456
0.446
0.444
0.443
0.440
0.432
0.431







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4aqv"(PDB-format) or 
 "4aqv"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.495089,0.588153,-0.639502 127.495239 center 0,0,0 model #1
move -365.958141,706.961842,535.332147 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!