Pairwise fitting emdb-1559 on pdb-3j9s by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-3j9s by gmfit(PID:416956).





RANK[1] Corr.Coeff:0.437

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-3j9s)

display:



color:


b'SINGLE PARTICLE CRYO-EM STRUCTURE OF ROTAVIRUS VP6 AT 2.6 ANGSTROM    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.437
0.437
0.399
0.397
0.395
0.359
0.358
0.356
0.354
0.315







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j9s"(PDB-format) or 
 "3j9s"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.508921,-0.356632,0.783463 145.030924 center 0,0,0 model #1
move 320.201320,666.187410,-525.253459 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!