Pairwise fitting emdb-1559 on pdb-3j8x by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-3j8x by gmfit(PID:4089828).





RANK[1] Corr.Coeff:0.666

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

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3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-3j8x)

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color:


b'HIGH-RESOLUTION STRUCTURE OF NO-NUCLEOTIDE KINESIN ON MICROTUBULES    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.666
0.652
0.651
0.648
0.622
0.618
0.607
0.604
0.604
0.599







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j8x"(PDB-format) or 
 "3j8x"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.673322,0.342821,0.655066 160.055755 center 0,0,0 model #1
move -647.755612,30.312155,-704.685288 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j8x)]

[Download the target GMM(emdb 1559)]

[Download gmfit result file(4089828)]