Pairwise fitting emdb-1559 on pdb-3j82 by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-3j82 by gmfit(PID:604988).





RANK[1] Corr.Coeff:0.657

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-3j82)

display:



color:


b'ELECTRON CRYO-MICROSCOPY OF DNGR-1 IN COMPLEX WITH F-ACTIN            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.657
0.637
0.610
0.607
0.602
0.584
0.579
0.573
0.563
0.562







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j82"(PDB-format) or 
 "3j82"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.723189,0.522187,0.452015 124.735967 center 0,0,0 model #1
move 421.229729,-314.134763,724.245115 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!