Pairwise fitting emdb-1559 on pdb-3j4f by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-3j4f by gmfit(PID:456523).





RANK[1] Corr.Coeff:0.681

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-3j4f)

display:



color:


b'STRUCTURE OF HIV-1 CAPSID PROTEIN BY CRYO-EM                          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.681
0.671
0.633
0.631
0.629
0.626
0.621
0.615
0.613
0.584







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j4f"(PDB-format) or 
 "3j4f"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.001406,0.758471,0.651705 142.688941 center 0,0,0 model #1
move 472.623337,-641.755362,-219.471730 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!