Pairwise fitting emdb-1559 on pdb-3j2v by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-3j2v by gmfit(PID:4062454).





RANK[1] Corr.Coeff:0.523

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

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3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-3j2v)

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b'CRYOEM STRUCTURE OF HBV CORE                                          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.523
0.466
0.466
0.464
0.462
0.461
0.459
0.456
0.420
0.415







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j2v"(PDB-format) or 
 "3j2v"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.314374,0.114510,-0.942367 149.842479 center 0,0,0 model #1
move -138.078585,761.938231,-346.819513 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j2v)]

[Download the target GMM(emdb 1559)]

[Download gmfit result file(4062454)]