Pairwise fitting emdb-1559 on pdb-3dco by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-3dco by gmfit(PID:4112296).





RANK[1] Corr.Coeff:0.651

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

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3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-3dco)

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color:


b'DROSOPHILA NOD (3DC4) AND BOVINE TUBULIN (1JFF) DOCKED INTO THE 11-   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.651
0.639
0.629
0.626
0.602
0.600
0.589
0.582
0.576
0.574







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3dco"(PDB-format) or 
 "3dco"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.142149,-0.708585,-0.691159 137.129181 center 0,0,0 model #1
move 304.120463,-408.237890,-723.858008 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3dco)]

[Download the target GMM(emdb 1559)]

[Download gmfit result file(4112296)]