Pairwise fitting emdb-1559 on pdb-3dco by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-3dco by gmfit(PID:4112296).

RANK[1] Corr.Coeff:0.651 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-3dco)
display:
color:
b'DROSOPHILA NOD (3DC4) AND BOVINE TUBULIN (1JFF) DOCKED INTO THE 11- ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.651 0.639 0.629 0.626 0.602 0.600 0.589 0.582 0.576 0.574

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3dco"(PDB-format) or "3dco"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.142149,-0.708585,-0.691159 137.129181 center 0,0,0 model #1
    move 304.120463,-408.237890,-723.858008 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3dco)] [Download the target GMM(emdb 1559)] [Download gmfit result file(4112296)]