Pairwise fitting emdb-1446 on emdb-5659 by gmfit










Pairwise fitting of target emdb-1446 on reference emdb-5659 by gmfit(PID:4188658).





RANK[1] Corr.Coeff:0.686

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

display:



color:



Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(emdb-5659)

display:



color:


Cryo-electron microscopy of herpesvirus simplex type 1 C-capsid [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.686
0.683
0.682
0.682
0.682
0.682
0.678
0.676
0.674
0.671







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5659.map.gz", and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.385666,0.152946,0.909873 174.080903 center 0,0,0 model #1
move 770.212556,773.702694,766.978681 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5659)]

[Download the target GMM(emdb 1446)]

[Download gmfit result file(4188658)]