Pairwise fitting emdb-1446 on emdb-2550 by gmfit



Pairwise fitting of target emdb-1446 on reference emdb-2550 by gmfit(PID:4099081).

RANK[1] Corr.Coeff:0.443 [JSmol] [Molmil]
TARGET(emdb-1446)
display:
color:
Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1446)]
REFERENCE(emdb-2550)
display:
color:
Four levels of hierarchical organization including non-covalent chainmail brace the mature tumor herpesvirus capsid against pressurization [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.443 0.433 0.428 0.427 0.409 0.406 0.406 0.403 0.328 0.326

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2550.map.gz", and read it.
  2. Download the Target map "emd_1446.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.968597,0.245789,0.037530 172.918130 center 0,0,0 model #1
    move 811.063294,821.998461,1063.177258 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2550)] [Download the target GMM(emdb 1446)] [Download gmfit result file(4099081)]